vpcr_list

Virtual PCR, based on Bowtie

Commands

clean

Remove all job data, not the Moa job itself, note that this must be implemented by the template.

run

Predict the fragments that would be generated by a PCR

Parameters

bowtie_db

Location of the bowtie database used for the vpcr

type: file

default: ``

optional: False

insert_max

maximum insert size for a vpcr fragment

type: integer

default: 10000

optional: True

insert_min

minimal insert size for a fragment

type: integer

default: 10

optional: True

primer_list

List of primers to check

type: file

default: {}

optional: False

miscellaneous

Backend

gnumake

Author

Mark Fiers

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Wed Nov 10 07:56:48 2010