bdbb
Bidirectional best BLAST hit
Discover the bidirectional best blast hit between two sets of sequences
Commands
- clean
- Remove all job data, not the Moa job itself, note that this must be implemented by the template.
- run
- generate a list of bidirectional best blast hits between two databases of sequences
Filesets
- input_a
First multi fasta input set
type: single
category: input
optional: False
pattern: */*.fasta
- input_b
Second multi fasta input set
type: single
category: input
optional: False
pattern: */*.fasta
- output
List of bidirectional best blasts hits
type: map
source: input_a
category: output
optional: True
pattern: */*.list
Parameters
- eval
e value cutoff
type: float
default: 1e-10
optional: True
- extract
Extract the identified sequences from the input fasta files
type: boolean
default: False
optional: True
- nothreads
Threads to run blast with with
type: integer
default: 4
optional: True
- protein
Is this a protein set
type: boolean
default: False
optional: True
- tblastx
If this is a nucleotide set, use tblastx?? (otherwise use blastn)
type: boolean
default: F
optional: True
miscellaneous
- Backend
- ruff
- Author
- Mark Fiers
- Creation date
- Wed Nov 10 07:56:48 2010
- Modification date
- unknown