bwa_samse
Generate alignments in SAM format given single end reads, using both ‘bwa samse’.
Commands
- clean
- Remove all job data, not the Moa job itself
- run
- run bwa samse
Filesets
- fq_input
- fastq input file
- output_bam
output bam file
type: map
source: fq_input
category: output
optional: {}
pattern: ./*.bam
- sai_input
sai input directory - filenames must correspond to the fastq input files
type: map
source: fq_input
category: input
optional: False
pattern: */*.sai
Parameters
- db
bwa database to align against
type: string
default: ``
optional: False
- max_aln_out
Maximum number of alignments to output in the XA tag for reads paired properly
type: integer
default: 3
optional: True
miscellaneous
- Backend
- ruff
- Author
- Yogini Idnani, Mark Fiers
- Creation date
- Wed Nov 25 17:06:48 2010
- Modification date
- unknown