fasta2gff

GFF from FASTA

Derive GFF from a FASTA file, usually to accompany the Sequence for upload to a generic genome browser database.

Commands

clean

Remove all job data, not the Moa job itself, note that this must be implemented by the template.

run

no help defined

Parameters

f2g_gffsource

Source to be used in the gff

type: string

default: ``

optional: False

f2g_input_dir

Directory with the input fasta files

type: directory

default: ``

optional: False

f2g_input_extension

glob pattern of the fasta files (default: *.fasta)

type: string

default: fasta

optional: True

f2g_options

options to be passed to the fasta2gff script

type: string

default: ``

optional: True

f2g_output_dir

Directory with the output gff

type: directory

default: ./gff

optional: True

miscellaneous

Backend

gnumake

Author

Mark Fiers

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Wed Nov 10 07:56:48 2010