bartab¶

Bartab

BARTAB - a tool to process sff files

Commands¶

clean: Remove all job data, not the Moa job itself, note that this must be implemented by the template.
run

extra_parameters: extra parameters to feed bartab

type: string

default: ``

optional: True
forward_primer: remove forward primer

type: string

default: ``

optional: True
in: input file for bartab

type: file

default: ``

optional: False
map: A file mapping barcodes to metadata

type: file

default: ``

optional: True
min_length: minimun acceptable sequence length

type: integer

default: 50

optional: True
out: base output name

type: integer

default: bartab

optional: True
qin: Quality scores for the input fasta file

type: file

default: ``

optional: True
reverse_primer: remove reverse primer

type: string

default: ``

optional: True
trim: Trim barcode

type: set

default: T

optional: True