varscan

Varscan

Run VARSCAN to detect snps

Commands

clean

Remove all job data, not the Moa job itself, note that this must be implemented by the template.

run

no help defined

Parameters

extra_params

location of varscan.pl, defaults to /usr/lib/perl5/site_perl/5.8.8/varscan.pl

type: string

default: ``

optional: True

input_file

Varscan input alignments file

type: file

default: ``

optional: True

output_name

Base name of the output files

type: string

default: out

optional: True

perl_file

the varscan (perl) executable

type: file

default: ``

optional: True

miscellaneous

Backend

gnumake

Author

Mark Fiers

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Wed Nov 10 07:56:48 2010