filterwgs_pair
Execute a “map22” ad-hoc analysis - two input files, two output files
Filter raw WGS data
Commands
- run
- Filter WGS data
Filesets
- input1
- forward input fastq
- input2
reverse input fastq
type: map
source: input1
category: input
optional: False
pattern: */*
- output1
forward output fastq
type: map
source: input1
category: output
optional: True
pattern: ./*
- output2
reverse output fastq
type: map
source: input1
category: output
optional: True
pattern: ./*
Parameters
- adapters
Fasta file with the adapter sequences to trim
type: file
default: {}
optional: False
- minlen
Minimum remaining sequence length
type: int
default: 50
optional: True
- qual
quality threshold causing trimming
type: int
default: 13
optional: True
title
type: {}
default: Filter paired fastq files using fastq-mcf
optional: {}
miscellaneous
- Backend
- ruff
- Author
- Mark Fiers
- Creation date
- Tue Mar 29 16:34:19 2011
- Modification date
- Mon, 13 Feb 2012 09:16:36 +1300