bwa_index
Bwa index builder
Builds a bwa index from a reference sequence
Commands
- clean
- Remove all job data
- run
- Create the index
Filesets
- input
Input fasta file for the bowtie database
type: single
category: input
optional: False
pattern: */*.fasta
Parameters
- algorithm
Algorithm for constructing BWT index. Available options are ‘is’ and ‘bwtsw’
type: string
default: is
optional: True
- color_space
input sequences are in the color space
type: boolean
default: False
optional: True
- prefix
Name of the bwa index to create
type: string
default: db
optional: True
miscellaneous
- Backend
- ruff
- Author
- Mark Fiers, Yogini Idnani
- Creation date
- Wed Nov 10 07:56:48 2010
- Modification date
- Wed Nov 10 07:56:48 2010