sffinfo

sffinfo

Roche sffinfor tool - extract information from sff files

Commands

clean

Remove all job data, not the Moa job itself, note that this must be implemented by the template.

run

Use the Roche sffinfo tool to extract reads, quality scores, flowgrams and accession ids from one or more sff files

Filesets

accession

type: map

source: input

category: output

optional: {}

pattern: ./*.acc

flowgram

type: map

source: input

category: output

optional: {}

pattern: ./*.flow

input

Sff input files

quality

type: map

source: input

category: output

optional: {}

pattern: ./*.qual

sequence

type: map

source: input

category: output

optional: {}

pattern: ./*.reads

Parameters

accessions

Output the accessions

type: set

default: T

optional: True

flowgrams

output the flowgrams

type: set

default: F

optional: True

quality

Output quality scores

type: set

default: T

optional: True

sequences

Output the sequences

type: set

default: T

optional: True

untrimmed

output untrimmed sequences & qualities

type: set

default: F

optional: True

miscellaneous

Backend

gnumake

Author

Mark Fiers

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Wed Nov 10 07:56:48 2010