orthomcl
Run OrthoMCL
Execute one command, No in or output files are tracked by Moa.
Commands
- run
- no help defined
Parameters
- db
Db name
type: string
default: {}
optional: False
- eval
Evalue cutoff for blast to use
type: string
default: 1e-5
optional: True
- group_prefix
OrthoMCL prefix for group names
type: string
default: g_
optional: True
- host
Db Host
type: localhost
default: {}
optional: True
- input_dir
Input directory with compliant (read the manual) fasta files
type: string
default: {}
optional: False
- login
Db username
type: string
default: None
optional: False
- mcl_i
mcl -i value
type: float
default: 1.5
optional: True
- num_threads
Number of threads to use
type: integer
default: 4
optional: True
- pass
Db password
type: string
default: None
optional: False
- port
Db port
type: integer
default: 3306
optional: True
- prefix
OrthoMCL prefix for the database tables
type: string
default: ortho
optional: True
- vendor
Db vendor
type: string
default: mysql
optional: True
miscellaneous
- Backend
- ruff
- Author
- Mark Fiers
- Creation date
- Tue Mar 29 16:34:19 2011
- Modification date
- Wed Mar 30 06:02:01 2011