smaltdb
Smalt index builder
Builds a smalt index from a reference sequence
Commands
- clean
- Remove all job data, not the Moa job itself, note that this must be implemented by the template.
- run
- Create the smalt index
Filesets
- input
Input fasta file for the smalt database
type: single
category: input
optional: False
pattern: */*.fasta
- output
database name to create
type: single
category: output
optional: {}
pattern: db
Parameters
- word_length
word length
type: int
default: 10
optional: True
- word_spacing
word spacing
type: int
default: 6
optional: True
miscellaneous
- Backend
- ruff
- Author
- Mark Fiers
- Creation date
- Wed Nov 10 07:56:48 2010
- Modification date
- Wed Dec 09 07:56:48 2010