dottup

EMBOSS Dottup

Use dottup (from EMBOSS) to compare two sets of sequences

Commands

clean

Remove all job data, not the Moa job itself, note that this must be implemented by the template.

run

Run dottup

Parameters

input_dir_a

This set is compared to the sequences in input_dir_b.

type: directory

default: ``

optional: False

input_dir_b

The set to compare against

type: directory

default: ``

optional: True

input_extension

Extension of the dottup input files

type: string

default: fasta

optional: True

wordsize

Wordsize used to discover similarities between sequences

type: integer

default: 8

optional: True

miscellaneous

Backend

gnumake

Author

Mark Fiers

Creation date

Wed Nov 10 07:56:48 2010

Modification date

Wed Nov 10 07:56:48 2010