Welcome to Moa!

Lightweight, command line, workflows for bioinformatics

Moa aims to assist a bioinformatician to organize, document, share, execute and repeat workflows in a command line environment without losing any of the flexibility of the command line, and, at all times giving the user full access to all aspects of the workflow (see also Goals).

**NOTE: both the software and the manual are under development. Things

might change.**

Quick links

• Source code: https://github.com/mfiers/Moa
• Issue tracker: https://github.com/mfiers/Moa/issues
• Old issue tracker <http://moamoa.lighthouseapp.com/projects/73665-moa/overview>
• Python Package Index: http://pypi.python.org/pypi/moa/ (note - this is not updated regularly - might not work)
• Source code at Github
• PDF version of the manual

Table of contents:

• Goals
• Introduction
• Installation
• Three core templates
• Synchronizing jobs
• How to write a template
• Command reference
• Templates
• Moa API

More information

Indices and tables

• Index
• Module Index
• Search Page